Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: PACZ05KA014 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 7,956,467 sequences; 25,886,828,050 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Length=53
Distance tree of results Score E Sequences producing significant alignments: (Bits) Value gb|M90847.1|HIVFLDD Human immunodeficiency virus type 1, vira... 96.9 4e-18 gb|M90853.1|HIVFLD8 Human immunodeficiency virus type 1, vira... 96.9 4e-18 gb|M90851.1|HIVFLD5 Human immunodeficiency virus type 1, vira... 96.9 4e-18 emb|Z47539.1|HIVY1V315 HIV-1 RNA V3 region (patient Y, sample... 91.5 2e-16 emb|AM156916.1| Human immunodeficiency virus type 1 proviral ... 91.5 2e-16 emb|AM156915.1| Human immunodeficiency virus type 1 proviral ... 91.5 2e-16 gb|U13299.1|HIV1U13299 Human immunodeficiency virus type 1 pa... 91.5 2e-16 gb|U13294.1|HIV1U13294 Human immunodeficiency virus type 1 pa... 91.5 2e-16 gb|M92100.1|HIVFLPAR3A Human immunodeficiency virus type 1, v... 91.5 2e-16 gb|M90854.1|HIVFLPAD Human immunodeficiency virus type 1, vir... 91.5 2e-16 gb|M90855.1|HIVFLPA1 Human immunodeficiency virus type 1, vir... 91.5 2e-16 gb|EU329964.1| HIV-1 isolate BRII24 from Italy envelope glyco... 87.8 2e-15 gb|EF178361.1| HIV-1 MS2004-37_063 from Australia, genomic se... 87.8 2e-15 gb|AF188690.1| HIV-1 isolate IH5346 from Italy envelope glyco... 87.8 2e-15 gb|S70936.1| HIV-1 isolate KM-03 gp120 third hypervariable (V... 87.8 2e-15 gb|AF092652.1|AF092652 HIV-1 patient 1036 clone 2 from USA, e... 87.8 2e-15 gb|AF105785.1|AF105785 HIV-1 isolate B-RII-24 from Italy, env... 87.8 2e-15 gb|AF105516.1|AF105516 HIV-1 isolate B-DIII-17 from Italy, en... 87.8 2e-15 gb|AF105512.1|AF105512 HIV-1 isolate B-DIII-11 from Italy, en... 87.8 2e-15 gb|AF105499.1|AF105499 HIV-1 isolate B-DII-16 from Italy, env... 87.8 2e-15 gb|U58426.1|HIVU58426 Human immunodeficiency virus type 1 env... 87.8 2e-15 gb|U58419.1|HIVU58419 Human immunodeficiency virus type 1 env... 87.8 2e-15 gb|U58416.1|HIVU58416 Human immunodeficiency virus type 1 env... 87.8 2e-15 gb|U58404.1|HIVU58404 Human immunodeficiency virus type 1 env... 87.8 2e-15 gb|EU578073.1| HIV-1 isolate CRPE_TA4 from USA envelope glyco... 82.4 9e-14 gb|EU578072.1| HIV-1 isolate CRPE_TA3 from USA envelope glyco... 82.4 9e-14 gb|EU578071.1| HIV-1 isolate CRPE_B35 from USA envelope glyco... 82.4 9e-14 gb|EU578070.1| HIV-1 isolate CRPE_B34 from USA envelope glyco... 82.4 9e-14 gb|EU578069.1| HIV-1 isolate CRPE_B33 from USA envelope glyco... 82.4 9e-14 gb|EU578068.1| HIV-1 isolate CRPE_B32 from USA envelope glyco... 82.4 9e-14 gb|EU578067.1| HIV-1 isolate CRPE_B30 from USA envelope glyco... 82.4 9e-14 gb|EU578066.1| HIV-1 isolate CRPE_B29 from USA envelope glyco... 82.4 9e-14 gb|EU578065.1| HIV-1 isolate CRPE_B28 from USA envelope glyco... 82.4 9e-14 gb|EU578064.1| HIV-1 isolate CRPE_B26 from USA envelope glyco... 82.4 9e-14 gb|EU578063.1| HIV-1 isolate CRPE_B21 from USA envelope glyco... 82.4 9e-14 gb|EU578062.1| HIV-1 isolate CRPE_B14 from USA envelope glyco... 82.4 9e-14 gb|EU578061.1| HIV-1 isolate CRPE_B13 from USA envelope glyco... 82.4 9e-14 gb|EU578060.1| HIV-1 isolate CRPE_B11 from USA envelope glyco... 82.4 9e-14 gb|EU578059.1| HIV-1 isolate CRPE_A8 from USA envelope glycop... 82.4 9e-14 gb|EU578058.1| HIV-1 isolate CRPE_A5 from USA envelope glycop... 82.4 9e-14 gb|EU329974.1| HIV-1 isolate BRIII08 from Italy envelope glyc... 82.4 9e-14 gb|EF593221.1| HIV-1 isolate CRPE_SGA_TA3 from USA envelope g... 82.4 9e-14 gb|EF457058.1| HIV-1 isolate 108_m33_c5M2_3 from USA envelope... 82.4 9e-14 gb|EF457057.1| HIV-1 isolate 108_m33_c1A_1 from USA envelope ... 82.4 9e-14 gb|EF457056.1| HIV-1 isolate 108_m30_c1A_8 from USA envelope ... 82.4 9e-14 gb|EF457055.1| HIV-1 isolate 108_m30_c1A_9 from USA envelope ... 82.4 9e-14 gb|EF457054.1| HIV-1 isolate 108_m30_c1A_7 from USA envelope ... 82.4 9e-14 gb|EF457053.1| HIV-1 isolate 108_m30_c1A_6 from USA envelope ... 82.4 9e-14 gb|EF457052.1| HIV-1 isolate 108_m30_c1A_5 from USA envelope ... 82.4 9e-14 gb|EF457051.1| HIV-1 isolate 108_m30_c5M8_3 from USA envelope... 82.4 9e-14 gb|EF457050.1| HIV-1 isolate 108_m30_c5M6_3 from USA envelope... 82.4 9e-14 gb|EF457049.1| HIV-1 isolate 108_m30_c5M6_2 from USA envelope... 82.4 9e-14 gb|EF457048.1| HIV-1 isolate 108_m30_c5M6_1 from USA envelope... 82.4 9e-14 gb|EF457047.1| HIV-1 isolate 108_m30_c5M2_4 from USA envelope... 82.4 9e-14 gb|EF457046.1| HIV-1 isolate 108_m27_c1A-3 from USA envelope ... 82.4 9e-14 gb|EF457045.1| HIV-1 isolate 108_m24_c1B_4 from USA envelope ... 82.4 9e-14 gb|EF457044.1| HIV-1 isolate 108_m24_c1B_3 from USA envelope ... 82.4 9e-14 gb|EF457043.1| HIV-1 isolate 108_m24_c1B_2 from USA envelope ... 82.4 9e-14 gb|EF457042.1| HIV-1 isolate 108_m24_c1B_1 from USA envelope ... 82.4 9e-14 gb|EF457041.1| HIV-1 isolate 108_m24_c1A_5 from USA envelope ... 82.4 9e-14 gb|EF457040.1| HIV-1 isolate 108_m24_c1A_4 from USA envelope ... 82.4 9e-14 gb|EF457039.1| HIV-1 isolate 108_m24_c1A_3 from USA envelope ... 82.4 9e-14 gb|EF457038.1| HIV-1 isolate 108_m24_c1A_2 from USA envelope ... 82.4 9e-14 gb|EF457037.1| HIV-1 isolate 108_m24_c2C_8 from USA envelope ... 82.4 9e-14 gb|EF457036.1| HIV-1 isolate 108_m24_c2C_1 from USA envelope ... 82.4 9e-14 gb|EF457035.1| HIV-1 isolate 108_p_5_1 from USA envelope glyc... 82.4 9e-14 gb|EF457034.1| HIV-1 isolate 108_p_4_2 from USA envelope glyc... 82.4 9e-14 gb|EF457033.1| HIV-1 isolate 108_p_4_1 from USA env gene, par... 82.4 9e-14 gb|EF457032.1| HIV-1 isolate 108_p_3_1 from USA envelope glyc... 82.4 9e-14 gb|EF457031.1| HIV-1 isolate 108_p_2_3 from USA envelope glyc... 82.4 9e-14 gb|EF457030.1| HIV-1 isolate 108_p_2_2 from USA envelope glyc... 82.4 9e-14 gb|EF457029.1| HIV-1 isolate 108_p_1_3 from USA envelope glyc... 82.4 9e-14 gb|EF457028.1| HIV-1 isolate 108_p_1_1 from USA envelope glyc... 82.4 9e-14 gb|AY348371.1| HIV-1 isolate p2p158 clone 15 from USA envelop... 82.4 9e-14 gb|AY348342.1| HIV-1 isolate p2p138 clone 10 from USA envelop... 82.4 9e-14 gb|AY253958.1| HIV-1 isolate Pt16 from Japan envelope glycopr... 82.4 9e-14 gb|DQ061780.1| HIV-1 isolate T21_141_539 from Belgium envelop... 82.4 9e-14 gb|AF200858.1|AF200858 HIV-1 98MX.MC04 from Mexico envelope g... 82.4 9e-14 gb|AF092653.1|AF092653 HIV-1 patient 1036 clone 3 from USA, e... 82.4 9e-14 gb|AF111922.1|AF111922 HIV-1 isolate Biol_Gf1 from USA, envel... 82.4 9e-14 gb|AF105794.1|AF105794 HIV-1 isolate B-RIII-08 from Italy, en... 82.4 9e-14 gb|AF105513.1|AF105513 HIV-1 isolate B-DIII-12 from Italy, en... 82.4 9e-14 gb|AF105509.1|AF105509 HIV-1 isolate B-DIII-08 from Italy, en... 82.4 9e-14 gb|AF105507.1|AF105507 HIV-1 isolate B-DIII-05 from Italy, en... 82.4 9e-14 gb|AF105502.1|AF105502 HIV-1 isolate B-DII-19 from Italy, env... 82.4 9e-14 gb|AF105498.1|AF105498 HIV-1 isolate B-DII-15 from Italy, env... 82.4 9e-14 gb|AF105497.1|AF105497 HIV-1 isolate B-DII-14 from Italy, env... 82.4 9e-14 gb|AF105496.1|AF105496 HIV-1 isolate B-DII-13 from Italy, env... 82.4 9e-14 gb|AF105494.1|AF105494 HIV-1 isolate B-DII-11 from Italy, env... 82.4 9e-14 gb|AF105492.1|AF105492 HIV-1 isolate B-DII-08 from Italy, env... 82.4 9e-14 gb|AF105491.1|AF105491 HIV-1 isolate B-DII-06 from Italy, env... 82.4 9e-14 gb|AF100080.1|AF100080 HIV-1 clone p129d84c9 from the Netherl... 82.4 9e-14 gb|AF100079.1|AF100079 HIV-1 clone p129d84c8 from the Netherl... 82.4 9e-14 gb|AF100078.1|AF100078 HIV-1 clone p129d84c7 from the Netherl... 82.4 9e-14 gb|AF100075.1|AF100075 HIV-1 clone p129d84c15 from the Nether... 82.4 9e-14 gb|AF100074.1|AF100074 HIV-1 clone p129d84c13 from the Nether... 82.4 9e-14 gb|AF100073.1|AF100073 HIV-1 clone p129d84c12 from the Nether... 82.4 9e-14 gb|AF100072.1|AF100072 HIV-1 clone p129d84c11 from the Nether... 82.4 9e-14 gb|EF028250.1| HIV-1 isolate MC-ACH320.3.1.b_p1 from Netherla... 80.6 3e-13 gb|AY156762.1| HIV-1 clone LA24.EN from USA envelope glycopro... 75.2 1e-11
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Jan 6, 2009 5:48 PM Number of letters in database: 117,024,274 Number of sequences in database: 7,956,467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Matrix: blastn matrix:2 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 7956467 Number of Hits to DB: 1272186 Number of extensions: 66335 Number of successful extensions: 19676 Number of sequences better than 10: 2685 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 19653 Number of HSP's successfully gapped: 2685 Length of query: 53 Length of database: 25886828050 Length adjustment: 31 Effective length of query: 22 Effective length of database: 25640177573 Effective search space: 564083906606 Effective search space used: 564083906606 A: 0 X1: 22 (20.1 bits) X2: 33 (29.8 bits) X3: 110 (99.2 bits) S1: 24 (22.9 bits) S2: 39 (36.5 bits)